Install stable version through PyPi¶
There are a few dependencies needed to get proatac to run. All are very common bioinformatics tools / languages and should be readily available in most systems. However, note that the current implementation of proatac is not supported on Windows platforms.
Depending on your python environment, we generally recommend using a virtual environment
to keep python dependencies tidy. An example of installing proatac inside a new
python virtual environment called venv3
using the following sequence of commands–
python3 -m venv venv3
source venv3/bin/active
pip3 install proatac
Install via GitHub¶
Though not recommended, a bleeding-edge (development) version can be installed directly from Git. Again using a virtual environment–
python3 -m venv venv3
source venv3/bin/active
pip3 install git+ssh://git@github.com/buenrostrolab/search/tree/master/proatac
While installing proatac is obviously a great first step, make sure that all of the dependencies are met. Check out the next page for more detail.